By Fabian Amman, Stephan H. Bernhart (auth.), João C. Setubal, Nalvo F. Almeida (eds.)
This publication constitutes the refereed lawsuits of the eighth Brazilian Symposium on Bioinformatics, BSB 2013, held in Recife, Brazil, in November 2013. The 18 general papers provided have been conscientiously reviewed and chosen for inclusion during this e-book. The papers hide all points of bioinformatics and computational biology.
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Extra info for Advances in Bioinformatics and Computational Biology: 8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, Proceedings
An implementation of (b) is available in , but the implementation of (a) still has to be developed. V. Braga and J. Stoye The inversion-indel distance. The inversion-indel is a related model that applies to unichromosomal (linear or circular) genomes only, and, instead of generic DCJ operations, allows only inversions of DNA segments, besides indels. An example is given in Figure 4. e. when we have either only insertions or only deletions); and a heuristic for the symmetric case, in which both insertions and deletions are allowed.
LNCS (LNBI), vol. 6268, pp. 47–58. Springer, Heidelberg (2010) 7. : A linear-time algorithm for the perfect phylogeny haplotyping (PPH) problem. , Waterman, M. ) RECOMB 2005. LNCS (LNBI), vol. 3500, pp. 585–600. Springer, Heidelberg (2005) 8. : Inference of haplotypes from samples of diploids populations: Complexity and algorithms. Journal of Computational Biology 8, 305–324 (2001) HybHap: A Fast and Accurate Hybrid Approach 35 9. : Haplotype inference by pure parsimony. , Crochemore, M. ) CPM 2003.
A model of the cell-autonomous mammalian circadian clock. Proc. Natl. Acad. Sci. USA 106, 11107–11112 (2009) 15. : The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLOS ONE 7(11), e46835 (2012) 16. : Tuning the mammalian circadian clock: Robust synergy of two loops. PLoS Comput. Biol. 7(12), e1002309 (2011) 17. : RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo. Nucleic Acid Research 40, 8519–8535 (2012) 18. : Action of RORs and their ligands in (patho)physiology.